Joho the Blog[siu] Panel: Capturing the research lifecycle - Joho the Blog

[siu] Panel: Capturing the research lifecycle

It’s the first panel of the morning at Shaking It Up. Six men from six companies give brief overviews of their products. The session is led by Courtney Soderberg from the
Center for Open Science, which sounds great. [Six panelists means that I won’t be able to keep up. Or keep straight who is who, since there are no name plates. So, I’ll just distinguish them by referring to them as “Another White Guy,” ‘k?]

NOTE: Live-blogging. Getting things wrong. Missing points. Omitting key information. Introducing artificial choppiness. Over-emphasizing small matters. Paraphrasing badly. Not running a spellpchecker. Mangling other people’s ideas and words. You are warned, people.

Riffyn: “Manufacturing-grade quality in the R&D process.” This can easily double R&D productivity “because you stop missing those false negatives.” It starts with design

Github: “GitHub is a place where people do software development together.” 10M people. 15M software repositories. He points to Zenodo, a respository for research outputs. Open source communities are better at collaborating than most academic research communities are. The principles of open source can be applied to private projects as well. A key principle: everything has a URL. Also, the processes should be “lock-free” so they can be done in parallel and the decision about branching can be made later.

Texas Advanced Computing Center: Agave is a Science-as-a-Service platform. It’s a platform, that provides lots of services as well as APIs. “It’s SalesForce for science.”

CERN is partnering with GitHub. “GitHub meets Zenodo.” But it also exports the software into INSPIRE which links the paper with the software. [This
might be the INSPIRE he’s referring to. Sorry. I know I should know this.

Overleaf was inspired by etherpad, the collaborative editor. But Etherpad doesn’t do figures or equations. OverLeaf does that and much more.

Publiscize helps researchers translate their work into terms that a broader audience can understand. He sees three audiences: intradisciplinary, interdisciplinary, and the public. The site helps scientists create a version readable by the public, and helps them disseminate them through social networks.


Some white guys provided answers I couldn’t quite hear to questions I couldn’t hear. They all seem to favor openness, standards, users owning their own data, and interoperability.

[They turned on the PA, so now I can hear. Yay. I missed the first couple of questions.]

Github: Libraries have uploaded 100,000 open access books, all for free. “Expect the unexpected. That happens a lot.” “Academics have been among the most abusive of our platform…in the best possible way.”

Zenodo: The most unusual uses are the ones who want to instal a copy at their local institutions. “We’re happy to help them fork off Zenodo.”

Q: Where do you see physical libraries fitting in?

AWG: We keep track of some people’s libraries.

AWG: People sometimes accidentally delete their entire company’s repos. We can get it back for you easily if you do.

AWG: Zenodo works with Chris Erdmann at Harvard Library.

AWG: We work with FigShare and others.

AWG: We can provide standard templates for Overleaf so, for example, your grad students’ theses can be managed easily.

AWG: We don’t do anything particular with libraries, but libraries are great.

Courtney:We’re working with ARL on a shared notification system

Q: Mr. GitHub (Arfon Smith), you said in your comments that reproducibility is a workflow issue?

GitHub: You get reproducibility as a by-product of using tools like the ones represented on this panel. [The other panelists agree. Reproducibility should be just part of the infrastructure that you don’t have to think about.]

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