Paolo Ciccarese begins by reminding us just how vast the scientific literature is. We can’t possibly read everything we should. But “science is social” so we rely on each other, and build on each other’s work. “Everything we do now is connected.”

Today’s media do provide links, but not enough. Things are so deeply linked. “How do we keep track of it?” How do we communicate with others so that when they read the same paper they get a little bit of our mental model, and see why we found the article interesting?

Paolo’s project — Domeo [twitter:DomeoTool] — is a web app for “producing, browsing, and sharing manual and semi-automatic (structure and unstructured) annotations, using open standards. Domeo shows you an article and lets you annotate fragments. You can attach a tag or an unstructured comment. The tag can be defined by the user or by a defined ontology. Domeo doesn’t care which ontologies you use, which means you could use it for annotating recipes as well as science articles.

Domeo also enables discussions; it has a threaded msg facility. You can also run text mining and entity recognition systems (Calais, etc.) that automatically annotates the work with those words, which helps with search, understanding, and curation. This too can be a social process. Domeo lets you keep the annotation private or share it with colleagues, groups, communities, or the Web. Also, Domeo can be extended. In one example, it produces information about experiments that can be put into a database where it can be searched and linked up with other experiments and articles. Another example: “hypothesis management” lets readers add metadata to pick out the assertions and the evidence. (It uses RDF) You can visualize the network of knowledge.

It supports open APIs for integrating with other systems., including into the Neuroscience Information Framework and Drupal. “Domeo is a platform.” It aims at supporting rich source, and will add the ability to follow authors and topics, etc., and enabling mashups.

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I’m at a workshop on annotation at Harvard. Philip Desenne is giving one of the keynotes.

We’re here to talk about the Web 3.0, Phil says — making the Web more fully semantic.

Phil says that we need to re-write the definition of annotation. We should be talking about hyper-nota: digital media-rich annotations. Annotations are important, he says. Try to imagine social networks with the ratings, stars, comments, etc. Annotations also spawn new scholarship.

The new dew digital annotation paradigm is the gateway to Web 3.0: connecting knowledge through a common semantic language. There are many annotation tools out there. “All are very good in their own media…But none of them share a common model to interoperate.” That’s what we’re going to work on today. “The Open Annotation Framework” is the new digital paradigm. But it’s not a simple model because it’s a complex framework. Phil shows a pyramid: Create / Search / Seek patterns / Analyze / Publish / Share. [Each of these has multiple terms and ideas that I didn't have time to type out.]

Of course we need to abide by open standards. He points to W3C, Open Source and Creative Commons. And annotations need to include multimedia notes. We need to be able to see annotations relating to one another, building networks across the globe. [Knowledge networks FTW!] Hierarchies of meaning allow for richer connections. We can analyze text and other media and connect that metadata. We can look across regional and cultural patterns. We can publish, share and collaborate. All if we have a standard framework.

For this to happeb we beed a standardized referencing system for segments or fragments of a work. We also need to be able to export them into standard formats such as XML TEI.

Lots of work has been done on this: RDF Models and Ontologies, the Open Annotiation Community Group, the Open Annotation Model. “The Open Annotation Model is the common language.”

If we don’t adopt standards for annotation we’ll have disassociated, stagnant info. We’ll dereased innovation research, teaching, and learning knowledge. This is especially an issue when one thinks about MOOCs — a course with 150,000 students creating annotations.

Connective Collective Knowledge has existed for millennia he says. As far back as Aristarchus, marginalia had ymbols to allow pointing to different scrolls in the Library of Alexandria. Where are the connected collective knowledge systems today? Who is networking the commentaries on digital works? “Shouldn’t this be the mission of the 21st century library?”

Harvard has a portal for info about annotations: annotations.harvard.edu

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